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New pharmacogenomics model flags critical drug–gene risks for rapid intervention

A multi-center team has published an automated model that identifies "critical" pharmacogenomic results from electronic health records and triggers targeted clinical interventions, promising faster prevention of adverse drug reactions. The approach, published in The Pharmacogenomics Journal and developed with input from CPIC guidance, spotlights opportunities and challenges for policy, equity, and scaling genomic medicine.

Lisa Park3 min read
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New pharmacogenomics model flags critical drug–gene risks for rapid intervention
New pharmacogenomics model flags critical drug–gene risks for rapid intervention

A novel, automated model for identifying high-priority pharmacogenomic findings and prompting clinical action could change how health systems use genetic data to prevent harmful drug reactions, researchers reported in The Pharmacogenomics Journal (Vol. 25, Article 25, 2025). Developed by Uber, Hayduk, Pradhan, Ward, Flango, Graham and colleagues, the framework combines genotype information, current medication lists and clinical context to surface "critical" drug–gene pairs and route them to clinicians for rapid intervention.

The paper describes an implementation-ready pipeline that links variant calls to actionable prescribing guidance from the Clinical Pharmacogenetics Implementation Consortium (CPIC), then prioritizes results based on potential for immediate patient harm. In pilot deployments described by the authors, the system generated clinician-facing alerts and pharmacist recommendations integrated within the electronic health record, shortening the time between result availability and therapeutic action. "Our goal was to move beyond passive reporting toward a scalable, clinically focused intervention workflow," the authors write, noting the model is purpose-built to align with CPIC recommendations and institutional prescribing policies.

Health systems have struggled to translate genomic findings into safer prescribing because of data volume, variant interpretation complexity and lack of standardized workflows. The model addresses those barriers by automating triage: variants linked to high-risk interactions trigger escalated review and pharmacist-mediated changes, while lower-risk findings enter routine genomic problem lists. According to the team, this approach reduced clinician burden while improving the likelihood that actionable results will change prescribing in time to prevent adverse drug events.

Public health experts say the implications extend beyond individual patients. Adverse drug events are a leading cause of emergency visits and hospitalizations, particularly among older adults and people with multiple chronic conditions. Effective pharmacogenomic interventions have the potential to reduce these events, decrease health care utilization and improve medication equity. But translating promise into population benefit will require policy and infrastructure shifts: standardized EHR integration, reimbursement for genomic clinical workflows, workforce development for pharmacists and genetic counselors, and investment in interoperability.

The authors also highlight a persistent equity challenge: most genomic reference data reflect populations of European ancestry, limiting variant interpretation for people from historically underrepresented groups. They call for targeted efforts to expand diverse genomic databases and to validate the model across varied clinical settings, including community health centers that serve marginalized populations. Without deliberate equity-focused implementation, the roll-out of such tools risks widening existing disparities in medication safety.

Policy makers are already taking note. Experts say clearer reimbursement pathways for clinical genomic interpretation and pharmacist-led interventions could accelerate adoption, while national standards for EHR decision support would reduce variability across systems. The researchers say the model is open to adaptation and have made methodological details available to encourage replication.

As genomic testing becomes more routine, the study offers a pragmatic template for turning complex genetic data into timely, actionable care. The authors conclude that marrying rigorous variant interpretation with operational workflows and a focus on equity is essential to realizing pharmacogenomics’ public health promise.

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